How much does a train ticket from San Diego to Flagstaff cost?

The average train ticket price from San Diego to Flagstaff is $125. The best way to find train tickets from San Diego to Flagstaff is to book your tickets as early as possible. Prices tend to rise as your travel date approaches, so book in advance to secure the best prices!

How long is the train trip from San Diego to Flagstaff?

A train trip between San Diego and Flagstaff is around 13h 41m, although the fastest train will take about 13h 41m. This is the time it takes to travel the 354 miles that separates the two cities.

How many daily trains are there between San Diego and Flagstaff?

The number of trains from San Diego to Flagstaff can differ depending on the day of the week. On average, there are 2. Some trains are direct while others have layovers. Simplify your train trip from San Diego to Flagstaff by comparing and selecting the train that fits your travel style and budget on Busbud.

Which train companies travel from San Diego to Flagstaff?

When taking the train from San Diego to Flagstaff, you can travel comfortably and safely with Amtrak.

Train San Diego to Flagstaff from $92 | Refundable Tickets

Next train departures

Next departures for San Diego to Flagstaff on November 12
Vehicle type	Departure time	Departure location	Trip duration	Arrival time	Arrival location	Recommended
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	Cheapest
Train	2:10pm	Old Town San Diego	13h 41m	4:51am	Amtrak Station	Fastest
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	No tags
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	No tags
Train	2:10pm	Old Town San Diego	13h 41m	4:51am	Amtrak Station	No tags
Train	2:10pm	Old Town San Diego	13h 41m	4:51am	Amtrak Station	No tags

Next departures for San Diego to Flagstaff on November 14
Vehicle type	Departure time	Departure location	Trip duration	Arrival time	Arrival location	Recommended
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	Cheapest
Train	2:10pm	Old Town San Diego	13h 41m	4:51am	Amtrak Station	Fastest
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	No tags
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	No tags
Train	2:10pm	Old Town San Diego	13h 41m	4:51am	Amtrak Station	No tags
Train	2:10pm	Old Town San Diego	13h 41m	4:51am	Amtrak Station	No tags

Last refresh of the prices: Last Thursday at 3:31 AM PST.

Compare 2 ways to go from San Diego to Flagstaff

We recommend taking the train

Among the sustainable travel choices, the train stands out as the good way to reach Flagstaff. The journey takes about 13 hours 41 minutes and with fares starting at just $97, it presents an excellent value for a comfortable ride.

2train per day

13h 41mAverage Duration

360 milesDistance

53kgCO₂ emissions

	Average Price	Average Duration	CO₂ emissions	Actions
Bus	Average Price$71 - $226	Average Duration19h 50m	CO₂ emissions 14kg CO₂e
Train	Average Price$97 - $163	Average Duration13h 41m	CO₂ emissions 53kg CO₂e

Train Companies

Amtrak

4/55,579 reviews

Staff4.7

Timeliness3.8

Cleanliness4.6

Wifi3.6

Based on 5579 reviews, the company was rated 4.1 stars on Busbud. Travelers were especially satisfied with the seats and the ticket access but often complained with the wifi. Amtrak ticket prices on this trip start at $97

Train and bus companies in US:Amtrak, Trenitalia, Renfe, VIA Rail Canada, Amtrak Acela, NS Nederlandse Spoorwegen, Iryo

Frequently asked questions for your trip San Diego, CA, US - Flagstaff, US

How much does a train ticket from San Diego to Flagstaff cost?
How long is the train trip from San Diego to Flagstaff?
How many daily trains are there between San Diego and Flagstaff?
Which train companies travel from San Diego to Flagstaff?

Find cheapest prices for trains

Price is for a one-way ticket for one passenger and based on past searches.

Best price found

11/09

$103

11/10

$137

Today

$119

11/12

$92

11/13

No data

11/14

$103

11/15

No data

11/16

No data

The cheapest trip from San Diego, CA, US to Flagstaff, US was searched and found on Nov 12, 2025 with a price of $92

To save money and be sure you have the best seat, it's a good idea to buy your train tickets from San Diego, CA, US to Flagstaff, US, as early as possible.

You can expect to pay from $92 to $542 for a train ticket from San Diego, CA, US to Flagstaff, US based on the last 2 days. You can expect to find the cheapest price for the trip at $92 which is on 2025-11-12.